Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X _ __add__() (pyextal.roi.BaseROI method) __call__() (pyextal.callBloch.DataCollector method) (pyextal.callBloch.SimParams method) (pyextal.gof.BaseGOF method) (pyextal.gof.Chi2 method) (pyextal.gof.XCorrelation method) __post_init__() (pyextal.callBloch.SimParams method) (pyextal.dinfo.BaseDiffractionInfo method) (pyextal.dinfo.LARBEDDiffractionInfo method) __str__() (pyextal.roi.BaseROI method) _gl (pyextal.roi.BaseROI attribute) _nfit (pyextal.optimize.FineOptimize attribute) _perturbROI (pyextal.optimize.FineOptimize attribute) _probe (pyextal.optimize.FineOptimize attribute) _rotation (pyextal.roi.BaseROI attribute) _shiftDisk (pyextal.optimize.FineOptimize attribute) A allshift (pyextal.roi.BaseROI attribute), [1] alpha (pyextal.callBloch.SimParams attribute), [1] angle() (in module pyextal.metric) appliedSymmetry() (in module pyextal.symmetry) B background (pyextal.dinfo.CBEDDiffractionInfo attribute), [1] BASE (pyextal.roi.ROITYPE attribute) BaseDiffractionInfo (class in pyextal.dinfo) BaseGOF (class in pyextal.gof) BaseROI (class in pyextal.roi) beam2Group (pyextal.symmetry.GroupSymmetry attribute), [1] beamDict (pyextal.symmetry.GroupSymmetry attribute) beamGroup (pyextal.symmetry.GroupSymmetry attribute), [1] bigK (pyextal.callBloch.SimParams attribute), [1] bloch() (in module pyextal.callBloch) bloch_parse() (in module pyextal.callBloch) bloch_run() (in module pyextal.callBloch) C calculatePixelSize() (pyextal.roi.BaseROI method) calDOF() (pyextal.optimize.FineOptimize method) calibrateCBED() (in module pyextal.callBloch) calibrateLARBED() (in module pyextal.callBloch) callback() (pyextal.optimize.FineOptimize static method) callbackCell() (pyextal.optimize.CoarseOptimize static method) callbackDWF() (pyextal.optimize.CoarseOptimize static method) callbackXYZ() (pyextal.optimize.CoarseOptimize static method) calScaling() (pyextal.gof.Chi2 method) (pyextal.gof.Chi2_LARBED_multibackground method) (pyextal.gof.Chi2_multibackground method) calVariance() (pyextal.gof.Chi2 method) (pyextal.gof.Chi2_const method) (pyextal.gof.Chi2_LARBED method) (pyextal.gof.Chi2_multibackground method) CBED (pyextal.roi.ROITYPE attribute) CBEDDiffractionInfo (class in pyextal.dinfo) CBEDROI (class in pyextal.roi) cci (pyextal.callBloch.Data property) ccr (pyextal.callBloch.Data property) centro (pyextal.symmetry.GroupSymmetry attribute), [1] Chi2 (class in pyextal.gof) Chi2_const (class in pyextal.gof) Chi2_LARBED (class in pyextal.gof) Chi2_LARBED_multibackground (class in pyextal.gof) Chi2_multibackground (class in pyextal.gof) chisq2d() (in module pyextal.LucyRichardson) cinv (pyextal.callBloch.Data attribute), [1] CoarseOptimize (class in pyextal.optimize) constant (in module pyextal.Constants) convolved2d() (in module pyextal.LucyRichardson) correlationTargetCell() (pyextal.optimize.CoarseOptimize static method) correlationTargetDWF() (pyextal.optimize.CoarseOptimize static method) correlationTargetXYZ() (pyextal.optimize.CoarseOptimize static method) createInterp() (pyextal.roi.BaseROI method) (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) D Data (class in pyextal.callBloch) DataCollector (class in pyextal.callBloch) datpath (pyextal.dinfo.BaseDiffractionInfo attribute), [1] denormalizeX0() (pyextal.optimize.FineOptimize method) dinfo (pyextal.gof.Chi2_const attribute), [1] (pyextal.gof.Chi2_multibackground attribute), [1] (pyextal.optimize.CoarseOptimize attribute), [1] (pyextal.optimize.FineOptimize attribute), [1] (pyextal.roi.BaseROI attribute), [1] disks (pyextal.callBloch.SimParams attribute), [1] diskshift (pyextal.roi.CBEDROI attribute), [1] (pyextal.roi.LARBEDROI attribute) display() (pyextal.optimize.FineOptimize method) displayCoarseSearch() (pyextal.optimize.CoarseOptimize method) displayROI() (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) dp (pyextal.dinfo.BaseDiffractionInfo attribute), [1] (pyextal.roi.BaseROI attribute), [1] dpCenter (pyextal.roi.CBEDROI attribute), [1] dpSize (pyextal.roi.CBEDROI attribute), [1] DQE() (in module pyextal.LucyRichardson) dtpar (pyextal.dinfo.CBEDDiffractionInfo attribute), [1] E e2Xray() (in module pyextal.callBloch) eigenvector (pyextal.callBloch.Data attribute), [1] errorFunc (pyextal.optimize.FineOptimize attribute), [1] evaluateParam() (pyextal.optimize.FineOptimize method) evaluateSF() (pyextal.optimize.FineOptimize method) exitwave (pyextal.optimize.CoarseOptimize attribute), [1] F FineOptimize (class in pyextal.optimize) fourierSynthesis() (in module pyextal.densityMap) G gamma (pyextal.callBloch.Data attribute), [1] gCoff (pyextal.roi.CBEDROI attribute), [1] generateGrid() (pyextal.roi.BaseROI method) getAllSF() (pyextal.dinfo.BaseDiffractionInfo method) getGroup() (pyextal.symmetry.GroupSymmetry method) getPos() (pyextal.symmetry.GroupSymmetry method) getRange() (pyextal.optimize.FineOptimize method) getSampling() (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) getSF() (pyextal.dinfo.BaseDiffractionInfo method) getSymmetry() (in module pyextal.symmetry) getx0() (pyextal.optimize.FineOptimize method) gg (pyextal.callBloch.SimParams attribute), [1] gh (pyextal.callBloch.SimParams attribute), [1] gInclude (pyextal.roi.BaseROI attribute), [1] gindex (pyextal.dinfo.LARBEDDiffractionInfo attribute), [1] gl (pyextal.dinfo.BaseDiffractionInfo attribute), [1] (pyextal.optimize.CoarseOptimize attribute), [1] (pyextal.roi.BaseROI attribute) (pyextal.roi.BaseROI property) glTarget() (pyextal.optimize.CoarseOptimize static method) gmx (pyextal.callBloch.SimParams attribute), [1] gmxr (pyextal.callBloch.SimParams attribute), [1] gp (pyextal.symmetry.GroupSymmetry attribute), [1] GroupSymmetry (class in pyextal.symmetry) gx (pyextal.roi.BaseROI attribute), [1] H history (pyextal.optimize.FineOptimize attribute), [1] hklout (pyextal.callBloch.SimParams attribute), [1] HVTarget() (pyextal.optimize.CoarseOptimize static method) I includeBeam (pyextal.dinfo.BaseDiffractionInfo property) indices (pyextal.optimize.CoarseOptimize attribute), [1] (pyextal.roi.BaseROI attribute) (pyextal.roi.LARBEDROI attribute) initialize() (pyextal.roi.BaseROI method) (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) initPixsiz (pyextal.roi.BaseROI attribute) itilt (pyextal.callBloch.Data attribute), [1] ix (pyextal.callBloch.Data attribute), [1] iy (pyextal.callBloch.Data attribute), [1] K kt2pixel() (pyextal.roi.CBEDROI method) L LARBED (pyextal.roi.ROITYPE attribute) LARBED() (in module pyextal.callBloch) LARBED_tilt() (in module pyextal.callBloch) larbedCall() (pyextal.callBloch.SimParams method) LARBEDDiffractionInfo (class in pyextal.dinfo) LARBEDROI (class in pyextal.roi) lastParam (pyextal.optimize.FineOptimize attribute), [1] lookupReflections() (in module pyextal.callBloch) lookupSF() (in module pyextal.callBloch) lucy_Richardson() (in module pyextal.LucyRichardson) M matchIndex() (pyextal.roi.BaseROI method) (pyextal.roi.LARBEDROI method) module pyextal pyextal.blochwave pyextal.callBloch, [1] pyextal.cbedpy pyextal.Constants pyextal.densityMap pyextal.dinfo pyextal.gof, [1] pyextal.LucyRichardson pyextal.metric, [1] pyextal.optimize, [1] pyextal.roi, [1] pyextal.symmetry, [1] src mtf (pyextal.dinfo.CBEDDiffractionInfo attribute), [1] N name (pyextal.gof.BaseGOF attribute), [1] (pyextal.gof.Chi2 attribute), [1] (pyextal.gof.Chi2_const attribute), [1] (pyextal.gof.Chi2_LARBED attribute), [1] (pyextal.gof.Chi2_LARBED_multibackground attribute), [1] (pyextal.gof.Chi2_multibackground attribute), [1] (pyextal.gof.XCorrelation attribute) ndiag (pyextal.callBloch.Data attribute), [1] noncentro (pyextal.optimize.FineOptimize attribute), [1] normalizeX0() (pyextal.optimize.FineOptimize method) nout (pyextal.callBloch.SimParams attribute), [1] ntilt (pyextal.callBloch.SimParams attribute), [1] numIter (pyextal.dinfo.CBEDDiffractionInfo attribute), [1] nx (pyextal.callBloch.SimParams attribute), [1] O optimize() (pyextal.optimize.FineOptimize method) optimizeCell() (pyextal.optimize.CoarseOptimize method) optimizeDWF() (pyextal.optimize.CoarseOptimize method) optimizeHV() (pyextal.optimize.CoarseOptimize method) optimizeOrientationGeometry() (pyextal.optimize.CoarseOptimize method) optimizeOrientationGL() (pyextal.optimize.CoarseOptimize method) optimizeOrientationThickness() (pyextal.optimize.CoarseOptimize method) optimizeXYZ() (pyextal.optimize.CoarseOptimize method) P param (pyextal.optimize.CoarseOptimize attribute), [1] perturbROI (pyextal.optimize.FineOptimize property) phaseDict (pyextal.symmetry.GroupSymmetry attribute), [1] pix2Tilt() (in module pyextal.roi) pixel2exp() (pyextal.roi.CBEDROI method) pixsiz (pyextal.roi.BaseROI attribute) plotDensityMap_2D() (in module pyextal.densityMap) plotDensityMapIsosurface() (in module pyextal.densityMap) probe (pyextal.optimize.FineOptimize property) pyextal module pyextal.blochwave module pyextal.callBloch module, [1] pyextal.cbedpy module pyextal.Constants module pyextal.densityMap module pyextal.dinfo module pyextal.gof module, [1] pyextal.LucyRichardson module pyextal.metric module, [1] pyextal.optimize module, [1] pyextal.roi module, [1] pyextal.symmetry module, [1] R refineProbe (pyextal.optimize.FineOptimize attribute), [1] reflections (pyextal.optimize.FineOptimize attribute), [1] roi (pyextal.gof.Chi2_LARBED attribute), [1] (pyextal.optimize.CoarseOptimize attribute), [1] (pyextal.optimize.FineOptimize attribute), [1] ROItarget() (pyextal.optimize.FineOptimize static method) ROITYPE (class in pyextal.roi) roitype (pyextal.roi.BaseROI attribute) (pyextal.roi.CBEDROI attribute) (pyextal.roi.LARBEDROI attribute) rotation (pyextal.roi.BaseROI attribute) (pyextal.roi.BaseROI property) rotation() (in module pyextal.roi) S save() (pyextal.dinfo.BaseDiffractionInfo method) save_hkl() (pyextal.dinfo.BaseDiffractionInfo method) scale() (in module pyextal.metric) scale_factor (pyextal.optimize.CoarseOptimize attribute) scaling() (pyextal.gof.Chi2 method) selectROI() (pyextal.roi.BaseROI method) setTilt0() (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) sfMask (pyextal.optimize.FineOptimize attribute), [1] SFtarget() (pyextal.optimize.FineOptimize static method) sgnoise() (in module pyextal.LucyRichardson) shiftDisk (pyextal.optimize.FineOptimize property) ShiftTarget() (pyextal.optimize.FineOptimize static method) side (pyextal.optimize.CoarseOptimize attribute) sigma2 (pyextal.gof.Chi2 attribute) simParam() (pyextal.callBloch.SimParams method) SimParams (class in pyextal.callBloch) simulate() (in module pyextal.callBloch) snorm (pyextal.callBloch.SimParams attribute), [1] split_array_by_lengths() (in module pyextal.roi) src module store() (pyextal.callBloch.SimParams method) sumx() (in module pyextal.metric) symmetrizeVHKL() (in module pyextal.callBloch) symUpdate (pyextal.optimize.FineOptimize attribute), [1] T templates (pyextal.optimize.CoarseOptimize attribute), [1] (pyextal.roi.BaseROI property) terminate() (in module pyextal.callBloch) thickness (pyextal.dinfo.BaseDiffractionInfo attribute), [1] (pyextal.optimize.CoarseOptimize attribute), [1] (pyextal.optimize.FineOptimize attribute), [1] thicknessTarget() (pyextal.optimize.CoarseOptimize static method) tilt() (in module pyextal.callBloch) tilt0 (pyextal.callBloch.SimParams attribute), [1] tilt_run() (in module pyextal.callBloch) tilts (pyextal.callBloch.DataCollector attribute) (pyextal.callBloch.SimParams attribute), [1] tiltUnit() (in module pyextal.callBloch) tiltX (pyextal.dinfo.BaseDiffractionInfo attribute), [1] tiltY (pyextal.dinfo.BaseDiffractionInfo attribute), [1] transformDP() (pyextal.roi.BaseROI method) (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) U Ugh_dict (pyextal.symmetry.GroupSymmetry attribute), [1] updateExpGrid() (pyextal.roi.BaseROI method) (pyextal.roi.CBEDROI method) (pyextal.roi.LARBEDROI method) updateSF() (pyextal.dinfo.BaseDiffractionInfo method) updateSimGrid() (pyextal.roi.BaseROI method) (pyextal.roi.LARBEDROI method) updateSymUgh() (in module pyextal.callBloch) updateUgh() (in module pyextal.callBloch) V varianceMaps (pyextal.dinfo.LARBEDDiffractionInfo attribute), [1] vi (pyextal.callBloch.Data property) voigt_2d() (in module pyextal.optimize) volume() (in module pyextal.metric) vr (pyextal.callBloch.Data property) W wavelength() (in module pyextal.callBloch) write_cube() (in module pyextal.densityMap) X XCorrelation (class in pyextal.gof)